PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881162.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 526aa MW: 58038 Da PI: 9.575

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C k F r+s+L rH r H XP_023881162.1 196 FACSTCAKGFARRSDLARHERIH 218 78*******************99 PP
2	zf-C2H2	16.5	2.4e-05	224	248	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk F ++s L++H r+H XP_023881162.1 224 HVCDhpGCGKQFIQRSALTVHSRVH 248 689999*****************99 PP
3	zf-C2H2	24	9.9e-08	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk+Fs++s+L rH r H XP_023881162.1 254 HMCERCGKPFSDSSSLARHRRIH 276 68*******************99 PP
4	zf-C2H2	22	4.3e-07	282	306	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykCp dC k+F+r+ +L+rH++ H XP_023881162.1 282 YKCPyaDCQKTFTRRTTLTRHQSHH 306 9*********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MAALSVNHFR TLRDPREGAR AAQHGMDLTS LLNTNRSTAA VGFRNMQYEV PLPMNMNHDM 60 SGNAHYGQQN LYVPNNTGRI KSESNSERGV SPHASEHSSR YSSQTPQQNG MAFSQMASQL 120 ANGMAHARYP TPPQQQHMQS NTMPIISHSY HPNQAQDQSY QQQAQMGAMQ QAAPQEHSPM 180 EGGRTSTGSN SLPKAFACST CAKGFARRSD LARHERIHSG VRPHVCDHPG CGKQFIQRSA 240 LTVHSRVHTG EKPHMCERCG KPFSDSSSLA RHRRIHSGKR PYKCPYADCQ KTFTRRTTLT 300 RHQSHHTGTI EESEAATAAA LASRMSMQGQ RSRGSDEEDY SQDGKSPMPH HIDRPSSASP 360 ANGMNGLPGQ LQRQSSDYYL NAMNSGIAAM PAHLRSEMQP TPRAQSPAQF SMPVTSAQTR 420 SALTSNPSSG YNPPQILEPP TTSAQQQNGI GNSSPHMSTN MGWQSPHATP HDNYSTYTTT 480 NGQYNTVNAT QMYYQQAAVQ QRPHSTGPVD FNHLRTGQEM WVQHQQ

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MAALSVNHFR TLRDPREGAR AAQHGMDLTS LLNTNRSTAA VGFRNMQYEV PLPMNMNHDM  60
SGNAHYGQQN LYVPNNTGRI KSESNSERGV SPHASEHSSR YSSQTPQQNG MAFSQMASQL  120
ANGMAHARYP TPPQQQHMQS NTMPIISHSY HPNQAQDQSY QQQAQMGAMQ QAAPQEHSPM  180
EGGRTSTGSN SLPKAFACST CAKGFARRSD LARHERIHSG VRPHVCDHPG CGKQFIQRSA  240
LTVHSRVHTG EKPHMCERCG KPFSDSSSLA RHRRIHSGKR PYKCPYADCQ KTFTRRTTLT  300
RHQSHHTGTI EESEAATAAA LASRMSMQGQ RSRGSDEEDY SQDGKSPMPH HIDRPSSASP  360
ANGMNGLPGQ LQRQSSDYYL NAMNSGIAAM PAHLRSEMQP TPRAQSPAQF SMPVTSAQTR  420
SALTSNPSSG YNPPQILEPP TTSAQQQNGI GNSSPHMSTN MGWQSPHATP HDNYSTYTTT  480
NGQYNTVNAT QMYYQQAAVQ QRPHSTGPVD FNHLRTGQEM WVQHQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	9e-19	C2H2 family protein