PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881583.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 25698.9 Da PI: 8.3176

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	40	91	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ Fe++ + +++ +LA++lgL+ rq+ +WFqNrRa++k XP_023881583.1 40 SRFSAEQIKSLESSFESETRLEPRKKVQLARELGLQPRQIAIWFQNRRARWK 91 67*************************************************9 PP
2	HD-ZIP_I/II	123	1.5e-39	38	128	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k r+s+eq+k+LE+sFe+e++Lep++Kv+lareLglqprq+a+WFqnrRAR+k+kq+E++y+ Lk++yd+l+++ e+L+ke ++L +l+ XP_023881583.1 38 NKSRFSAEQIKSLESSFESETRLEPRKKVQLARELGLQPRQIAIWFQNRRARWKSKQIENEYKILKDNYDNLASQFESLKKERQSLLIQLQ 128 699***********************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MEGREYMYSP AVPEGNYEIF TCQQPPQTAR KKKNKIVNKS RFSAEQIKSL ESSFESETRL 60 EPRKKVQLAR ELGLQPRQIA IWFQNRRARW KSKQIENEYK ILKDNYDNLA SQFESLKKER 120 QSLLIQLQIL GDLLEKTHGG NEHSKGLEGN SAVCTSNNVN TNSETKAKLN CFQEGMEGSA 180 VMCPHEDKTG VGNLEEGQGL LNVTEHVHVP FASLEKWTRG EREW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	9e-48	HD-ZIP family protein