PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881856.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 570aa MW: 65375.4 Da PI: 6.5178

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.7	9e-30	120	205	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_023881856.1 120 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 205 8***********************************999*************************98..55667*****85 PP
2	trihelix	56.8	5.8e-18	415	496	2	83
trihelix 2 WtkqevlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W+++e++ L+++r+ me r+r++ +++++lWee++ km+ g+ rs+ + k+kwe +n+ ++ keg kkr +e+s++c yf+ XP_023881856.1 415 WPESEIMRLMQFRNGMELRFRQSvCSEEALWEEIAGKMACLGYDRSALMYKDKWERINNCQRRSKEGYKKR-KENSRSCGYFQ 496 *******************8549*****************************************8.78888***7 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MEMEDQYNIA DLRQLMNGPR SHFPAIPEPQ DLFSAHQHRS LTPTSQQHYD MLMLNRHHHQ 60 HQQVPPELLP RGLHDFRADS TSTQAAITTV AATNTATSTP SLSGLDADTG CLGGDAATGR 120 WPRQETLTLL EIRSRLDPKF KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY 180 YKKTKEGKAG RQDGKHYRFF RQLEALYGET SNTNSVPESH FAGHGLRFHT IGQNITQANQ 240 DGFQSQKHCD SLSLSNSSEY GTSSSDDNDL STAAAMMEND SGEKRRKRRG RSWKGKIKDF 300 IDSQMRNLIE KQEAWLEKLM NTLEQKEQER MLKEEEWRKE EAARIEKEHK FWAKERSWIE 360 ARDAALMEAL QKLTGSEVKA SSSEALMAAE IQNQSENQNE DGSEILNNNG KGESWPESEI 420 MRLMQFRNGM ELRFRQSVCS EEALWEEIAG KMACLGYDRS ALMYKDKWER INNCQRRSKE 480 GYKKRKENSR SCGYFQNNES SLYNQGGAYC EMNEQEPETV RLQGNNDGSS PSNSNAGNSV 540 HESCFPFLMA DGENLWENYG LKLNKGNHNQ

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MEMEDQYNIA DLRQLMNGPR SHFPAIPEPQ DLFSAHQHRS LTPTSQQHYD MLMLNRHHHQ  60
HQQVPPELLP RGLHDFRADS TSTQAAITTV AATNTATSTP SLSGLDADTG CLGGDAATGR  120
WPRQETLTLL EIRSRLDPKF KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF RQLEALYGET SNTNSVPESH FAGHGLRFHT IGQNITQANQ  240
DGFQSQKHCD SLSLSNSSEY GTSSSDDNDL STAAAMMEND SGEKRRKRRG RSWKGKIKDF  300
IDSQMRNLIE KQEAWLEKLM NTLEQKEQER MLKEEEWRKE EAARIEKEHK FWAKERSWIE  360
ARDAALMEAL QKLTGSEVKA SSSEALMAAE IQNQSENQNE DGSEILNNNG KGESWPESEI  420
MRLMQFRNGM ELRFRQSVCS EEALWEEIAG KMACLGYDRS ALMYKDKWER INNCQRRSKE  480
GYKKRKENSR SCGYFQNNES SLYNQGGAYC EMNEQEPETV RLQGNNDGSS PSNSNAGNSV  540
HESCFPFLMA DGENLWENYG LKLNKGNHNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-116	Trihelix family protein