PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881883.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 506aa MW: 54993.7 Da PI: 6.7392

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.4e-17	167	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023881883.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*****************......55**********************997 PP
2	AP2	41.1	4.4e-13	259	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_023881883.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 309 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MLDLNLNVAS AESTQEYDSA AFLEKFPEGS SANQMDESGT SNSSIVNADA CDDESCSTRA 60 AGDVYTFNFD ILKVGGGGGG GGGGAEDDVV TVTTKELFPF STGGGPNGVD LMNWQGQSSS 120 SSSSKKSWID LSFDQSGAEV RAVQLQQPPP QQPPVKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLSDYED DLKQMKNLTK 240 EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY 300 DKAAIKCNGR EAVTNFEPST YEGEMISDAS NEGGNHNLDL NLAISPPLGN GSKENEGCLQ 360 FHSDSYNAQN GRGSRMENHA HATLSNSPFK GLVMASERPP MWNAVYPNFI PKEERATEKR 420 IALGSSHGLP NWAWQMHGQV SATPMPLFST AASSGFSFSA TPPSAAILPS KPPNSTAHNV 480 FLTSSATAAT NTSQYYYQMK PSQAPP

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MLDLNLNVAS AESTQEYDSA AFLEKFPEGS SANQMDESGT SNSSIVNADA CDDESCSTRA  60
AGDVYTFNFD ILKVGGGGGG GGGGAEDDVV TVTTKELFPF STGGGPNGVD LMNWQGQSSS  120
SSSSKKSWID LSFDQSGAEV RAVQLQQPPP QQPPVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLSDYED DLKQMKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY  300
DKAAIKCNGR EAVTNFEPST YEGEMISDAS NEGGNHNLDL NLAISPPLGN GSKENEGCLQ  360
FHSDSYNAQN GRGSRMENHA HATLSNSPFK GLVMASERPP MWNAVYPNFI PKEERATEKR  420
IALGSSHGLP NWAWQMHGQV SATPMPLFST AASSGFSFSA TPPSAAILPS KPPNSTAHNV  480
FLTSSATAAT NTSQYYYQMK PSQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-137	AP2 family protein