PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023882857.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 114aa MW: 12251.8 Da PI: 7.9238

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023882857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.7	3.4e-13	37	84	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaC + rr+Ca++C+lapyfp ++p+k +h+ FGasn +++ ++ XP_023882857.1 37 PCAACNIFRRTCAEKCPLAPYFPCTEPAKVTTAHRSFGASNTINFFQT 84 7*******************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence
MEASIDTNTS TTSSTPISHS PPSPSSPPPP VAFVKGPCAA CNIFRRTCAE KCPLAPYFPC 60 TEPAKVTTAH RSFGASNTIN FFQTQECIEF NCPRNENAST CFICKNRSIS TTNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	9e-21	LBD family protein