PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883054.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 516aa MW: 55270.4 Da PI: 7.3502

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.8	7.4e-19	122	156	1	36
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 CsnCgttkTplWRr+p g +CnaCGlyy+ ++++ XP_023883054.1 122 CSNCGTTKTPLWRRSPAGAV-ICNACGLYYKARNQM 156 ******************.********98875 PP
2	GATA	56.2	4.8e-18	271	304	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgtt TplWRr++ g++ +CnaCGly++++g+ XP_023883054.1 271 CQNCGTTITPLWRRDEAGHT-ICNACGLYHKLHGS 304 ******************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MPHSVAVSVH APDPVGSSPN HQTEGQRQPS KQELEAAQHL LDHSQGVASP SSAQSMHIQG 60 PDPAYAESQN TAARGGDLSA QSDLGDSLQQ YNRDHGTSPK SQHATEQRRT PVPGTPPAGQ 120 VCSNCGTTKT PLWRRSPAGA VICNACGLYY KARNQMRPVG LKRGAAASQP PPGPRNDRSN 180 SPTLMQGGAT YVSADQSTNG TCPGGGRCNG TGGHEGCNGC PAYNNRISKT AQIALQQSNT 240 PAPEPSSNPA HVSNLVNNYQ SSGATSVVIA CQNCGTTITP LWRRDEAGHT ICNACGLYHK 300 LHGSHRPVQM KKAEIKRRKR VVPVDNNPPH HHQPSPIPAD DDATMSDAPT SSSGPAPEPR 360 HRGASGPIPV DFTDHFRRKY TLQQKEPASA VNNNNNHNHH ENNTNDDSAA GPSRKRSFDE 420 AVRDEEPYRH AQNVDLSKDE NIDPLLPRSS PDSTATAKAK RPSSVKGVRR AELQREAERM 480 RQLLLAKERE LAELDGERDD ESEAETDGEA AGGEDG

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MPHSVAVSVH APDPVGSSPN HQTEGQRQPS KQELEAAQHL LDHSQGVASP SSAQSMHIQG  60
PDPAYAESQN TAARGGDLSA QSDLGDSLQQ YNRDHGTSPK SQHATEQRRT PVPGTPPAGQ  120
VCSNCGTTKT PLWRRSPAGA VICNACGLYY KARNQMRPVG LKRGAAASQP PPGPRNDRSN  180
SPTLMQGGAT YVSADQSTNG TCPGGGRCNG TGGHEGCNGC PAYNNRISKT AQIALQQSNT  240
PAPEPSSNPA HVSNLVNNYQ SSGATSVVIA CQNCGTTITP LWRRDEAGHT ICNACGLYHK  300
LHGSHRPVQM KKAEIKRRKR VVPVDNNPPH HHQPSPIPAD DDATMSDAPT SSSGPAPEPR  360
HRGASGPIPV DFTDHFRRKY TLQQKEPASA VNNNNNHNHH ENNTNDDSAA GPSRKRSFDE  420
AVRDEEPYRH AQNVDLSKDE NIDPLLPRSS PDSTATAKAK RPSSVKGVRR AELQREAERM  480
RQLLLAKERE LAELDGERDD ESEAETDGEA AGGEDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45170.1	1e-08	GATA family protein