PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883298.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 321aa MW: 36282.9 Da PI: 7.0364

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++ ++ g+ R++k+c++rw++yl XP_023883298.1 14 RGLWSPEEDEKLINYITAYGHGCWSSLPKLAGLQRCGKSCRLRWLNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	41.4	3.4e-13	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++ lG++ W+ Ia+ ++ gRt++++k++w+ XP_023883298.1 67 RGSFSPQEAALIIELQGILGNK-WAQIAKQLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MRNHSCCNKQ KVKRGLWSPE EDEKLINYIT AYGHGCWSSL PKLAGLQRCG KSCRLRWLNY 60 LKPDLKRGSF SPQEAALIIE LQGILGNKWA QIAKQLPGRT DNEVKNFWNS SIKKKLISHN 120 VHAITTSPDM HYNGNSEESF FSLNTNPSWI LSSQQDPLYL PTPTPMLHGF DHGDLKLDQT 180 NCGANLVQFP TPPPMAPPSN SSFYDPLWSL GYQPHEQFDP NQELQNFSTS GATQHYIGNK 240 RIGPSITAPH YDEDPLSSMI PKPCENISGN CCGMPYLCAS QDLDPLARLP HFPASFDYPH 300 DPYVPNNHME YMDMPSCHHR T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-74	MYB family protein