PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023883776.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 381aa MW: 42193 Da PI: 4.7275

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023883776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	5	43	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39 C+++++++++ C d+++ lC+ C ++ ++ H++ XP_023883776.1 5 LCDKCNSQPAIVRCMDDKMSLCQGCDWNGneCSRlgHRR 43 7************************98776655556655 PP
2	CCT	62.4	1.4e-21	325	368	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+k+R F K+irY+sRKa+A++R+RvKGrFvkq XP_023883776.1 325 RDKAKMRYNEKKKSRTFGKQIRYASRKARADTRKRVKGRFVKQG 368 899***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MRSLLCDKCN SQPAIVRCMD DKMSLCQGCD WNGNECSRLG HRRQSLNCYT GCPSLTELSR 60 IWSSLLDSSS SSNFNSGWEY MTTQPMSENC INNCLEQRDN EGSLELVATK PNEIEPCSKF 120 ESWTGLSSLI PTNPNYMPYC RDQAPFFSEE SNLPKESLNF KDLVDTDDLC EGLNIDDVSL 180 KNGEIFGCPP GSTRYQFEDG GMECLSMEKN LSVTESNGPI ESALEASSSG QQDCMGFQSS 240 HVGGSASMMP VSGSPNCLLL NPTHTRNINL GFPTGQVHSS ISLSLSNITG ESSAADYQDC 300 GLSPVFLTVE SPWESNLEAS CPQARDKAKM RYNEKKKSRT FGKQIRYASR KARADTRKRV 360 KGRFVKQGEV YDYDPLTTSD F

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MRSLLCDKCN SQPAIVRCMD DKMSLCQGCD WNGNECSRLG HRRQSLNCYT GCPSLTELSR  60
IWSSLLDSSS SSNFNSGWEY MTTQPMSENC INNCLEQRDN EGSLELVATK PNEIEPCSKF  120
ESWTGLSSLI PTNPNYMPYC RDQAPFFSEE SNLPKESLNF KDLVDTDDLC EGLNIDDVSL  180
KNGEIFGCPP GSTRYQFEDG GMECLSMEKN LSVTESNGPI ESALEASSSG QQDCMGFQSS  240
HVGGSASMMP VSGSPNCLLL NPTHTRNINL GFPTGQVHSS ISLSLSNITG ESSAADYQDC  300
GLSPVFLTVE SPWESNLEAS CPQARDKAKM RYNEKKKSRT FGKQIRYASR KARADTRKRV  360
KGRFVKQGEV YDYDPLTTSD F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	4e-82	CO-like family protein