PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023885477.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 165aa    MW: 19044.3 Da    PI: 9.8931
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023885477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.2e-3733128196
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC kdC+lap fpae+ k+f+++h+lFG+sn++k+lk++++ +re+am+s+ ye+e++a+ P  G++g++++lq +l+++  el+
  XP_023885477.1  33 ACAACKYQRRKCGKDCPLAPFFPAEEFKSFQYAHRLFGVSNIMKILKQVHPADREKAMRSVKYESEMWAKFPNTGCYGIVQQLQLRLQEATGELQ 127
                     7***************************************************************************************9998887 PP

          DUF260  96 l 96 
                     +
  XP_023885477.1 128 S 128
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MASSNKILMI LMVFSSLLVF VFISQMTLTT KSACAACKYQ RRKCGKDCPL APFFPAEEFK  60
SFQYAHRLFG VSNIMKILKQ VHPADREKAM RSVKYESEMW AKFPNTGCYG IVQQLQLRLQ  120
EATGELQSLL PDLVRIYKDR IKKHYSHSPP SQLPLDITFH NYNQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-34LBD family protein