PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885509.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 26474.3 Da PI: 10.0415

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	86	140	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+ +++++ ++++ L+++l+L+ rqV vWFqNrRa+ k XP_023885509.1 86 RKKLRLSKEQSSLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTK 140 678899***********************************************98 PP
2	HD-ZIP_I/II	121	6.2e-39	86	174	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq++lLE+sF+ +++L+p +K++l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr + XP_023885509.1 86 RKKLRLSKEQSSLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSEENKRLKKELQELR-S 174 69*************************************************************************************9.3 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MEDDEACNTK LRLGLGLGDY VPRKKRHDEK AKPVVSLDLA FALRPKQEAM NVDHKADRSS 60 FKKMERDHDY PSKENGSINN KKDGGRKKLR LSKEQSSLLE DSFKIHSTLT PAQKQALSQQ 120 LNLKPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCESLSE ENKRLKKELQ ELRSLKVGPS 180 PLYIQIQKAA TLTMCTSCEK SIKANEVKGN EAVFDVVRKN NDKLQSGLDG SN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-57	HD-ZIP family protein