PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023885611.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 820aa    MW: 89424 Da    PI: 6.2525
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023885611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-21119174156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe +F+++++p++++r eL++klgL+ +qVk+WFqNrR+++k
  XP_023885611.1 119 KKKYHRHTPNQIQELEGFFKECPHPDEKQRLELSRKLGLEIKQVKFWFQNRRTQMK 174
                     79999************************************************999 PP
2START183.21.4e-573285502205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+k+a+ ++ +W ks     e +n++e+++ f++  +     + +e+ r++g+v+m++  lve+l+d + +W+e+++    +a+t++
  XP_023885611.1 328 LALTAMDELIKMAQPDSSLWIKSLdgrkETLNQEEYVRAFSPCIGtkpvgFVTETTRDTGMVIMNSLALVETLMDEG-RWKEMFPciiaRASTID 421
                     6899*************************************998899******************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      is+g      galq+m aelq+lsp v+ R   f+Ry++q+ +g+w++vdvS+d   + ++ +++v +++lpSg+++++++ng+skvtw+eh +
  XP_023885611.1 422 LISNGiagtknGALQVMHAELQVLSPFVSvRQLKFLRYCKQQAEGVWAVVDVSIDISIESTNMHPFVNCRRLPSGCVVQDMPNGYSKVTWIEHSE 516
                     ********************************************************999999********************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++ +h+l++++++ g+ +ga++wvatlqrq e
  XP_023885611.1 517 YNESGIHELYQPFIRAGMGFGAQRWVATLQRQSE 550
                     *******************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    
MMGFKGLISG GSGGGGAARV VADIAPHSSN MTSGAFAPLP FLSTQPIPSS MHSSSTLTLS  60
TSRKMEGQGG EMALMGENYD PGMVGRLRED GYESRSGSDN VEGSGDDQEA GNDQGPAKKK  120
KYHRHTPNQI QELEGFFKEC PHPDEKQRLE LSRKLGLEIK QVKFWFQNRR TQMKTQLERH  180
ENVILRQEND KLRAENTLMR DAMANPVCSN CGGPAIPGQI SFEEHQLRIE NARLKDELNR  240
ICALANKFLG RPLSSLATSI PLPSSTSGLE LGVGRNGIGA LSSMGAPLPM GLDLGDGIMG  300
ASAMPLIKPP MSFRGNEIPM DGSMFMDLAL TAMDELIKMA QPDSSLWIKS LDGRKETLNQ  360
EEYVRAFSPC IGTKPVGFVT ETTRDTGMVI MNSLALVETL MDEGRWKEMF PCIIARASTI  420
DLISNGIAGT KNGALQVMHA ELQVLSPFVS VRQLKFLRYC KQQAEGVWAV VDVSIDISIE  480
STNMHPFVNC RRLPSGCVVQ DMPNGYSKVT WIEHSEYNES GIHELYQPFI RAGMGFGAQR  540
WVATLQRQSE FLAILMSSTF PLEDHTTLSP AGKRSMLKLA QRMTDKFCSG VCASTTHKWD  600
NLRLGNVGEN VRVMTRRNLD DPGEPHGIVV SAATSVWMPV SQQGLFDFLR DDRSRSQWDI  660
LCVGRPIQEM IHIAKGQKQG NCVSLLRGNS TNESESNMLI LQETWTDASG SVVVYAPVDA  720
PSINVVMSGG DSTYVALLPS GFSILPDDQS FFGGPQNCNG TVIKEDNNGC DGSGGCLLTV  780
GFQILINSQP AAKLTVESVE TVNNLISCTI QKIKAALKIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein