PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023885811.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 587aa    MW: 63487.9 Da    PI: 4.9696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023885811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4571.1e-1392205811374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++le a al+++++ la++++ +m+++a+yf+eALa r++r        l p++  ++++ + l++   f+e++P+lkf+h
  XP_023885811.1 220 LVHTLMACAEAVQNENLEVAGALVKHINLLAASQAGAMRKVATYFAEALAFRIYR--------LYPQDCLDSSMLDMLQM--HFYETCPYLKFAH 304
                     689****************************************************........44555554345555444..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+ +++ vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s+++++l+++g +L+++Ae++gv+f+f+ lva++l+d+e
  XP_023885811.1 305 FTANQAILEAFTTASSVHVIDFGLKQGMQWPALIQALALRPGGPPVFRLTGIGPPQSNNTDALQQVGLKLKQLAETIGVQFHFRGLVANSLADME 399
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp.reseerik 284
                     l++L+++p Ea+aVn+v++lh++l++++s+e+    vL+++k ++Pk+v++veqea+hn++ F++rf eal+yys+lfdsle + +   ++++ +
  XP_023885811.1 400 LSMLDIRPAEAVAVNSVFELHNMLARPGSIEK----VLSTIKAVKPKIVTLVEQEANHNGTLFVDRFNEALHYYSSLFDSLEGSSGlVPQSQDLV 490
                     ********************************....*********************************************7774413458999* PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++lg++i+nvvaceg +r+erhetl +Wr+rl++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  XP_023885811.1 491 MSEMYLGKQICNVVACEGVDRVERHETLTQWRSRLGSAGFEPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 581
                     ******************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MNKRNHGETS SGGGFGVKGS GECSSSSSSV KAKMWDEEQD ASGGMDELLA VLGYKVKASE  60
MANVAEKLEQ LEMVMGTTPN LSCDSTVHYN PSDLSGWVQS MLSELNNPNP NLDPLQPIVE  120
SPVLVPPPPT TTTTTDSSAI NNVAGFSNSQ VDDSEYDLRA IPGSAVYPQT DISEGSRKRF  180
KSSTGSCSLL PSSSPLSSSN VCEQTRPVVL VDSQEAGVRL VHTLMACAEA VQNENLEVAG  240
ALVKHINLLA ASQAGAMRKV ATYFAEALAF RIYRLYPQDC LDSSMLDMLQ MHFYETCPYL  300
KFAHFTANQA ILEAFTTASS VHVIDFGLKQ GMQWPALIQA LALRPGGPPV FRLTGIGPPQ  360
SNNTDALQQV GLKLKQLAET IGVQFHFRGL VANSLADMEL SMLDIRPAEA VAVNSVFELH  420
NMLARPGSIE KVLSTIKAVK PKIVTLVEQE ANHNGTLFVD RFNEALHYYS SLFDSLEGSS  480
GLVPQSQDLV MSEMYLGKQI CNVVACEGVD RVERHETLTQ WRSRLGSAGF EPVHLGSNAF  540
KQASMLLALF AGGDGYRVEE NNGCLMLGWH TRPLIATSAW QLASTDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0GRAS family protein