PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885962.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 237aa MW: 26686.6 Da PI: 7.9169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.3e-13	68	114	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L XP_023885962.1 68 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 114 58***********************8.....7**********999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MHQPENHDLY RFLAGNGVFN VGPYGFPEVN SCELAGMPSF CSSSSYYPLE VSGLADTPPQ 60 DRALMALKNH KEAEKRRRER INSHLDKLRS LLPCNSKTDK ASLLAKVVQR VKELKEQTSE 120 ITELEALPSE TDEITVLSGD YTSDGRLIFK ASLCCEDRTD LMPDLIEILK SLHLKTLKAE 180 MATLGGRIRN VLIVAADKDH SIESVHFLQN ALKSLLERSS SSDRSKRRRI LDRKMVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	230	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	2e-85	bHLH family protein