PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023885965.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 25986.4 Da PI: 7.0447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023885965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	61	115	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t++ql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+ XP_023885965.1 61 KKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKN 115 56779************************************************95 PP
2	HD-ZIP_I/II	118.2	4.5e-38	60	151	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+ +LE+sF+ee kL+p+rK +l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk++yda+++e+ +L++ev +L++ l+ XP_023885965.1 60 EKKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDVLKQEYDAISREKLKLQEEVMKLKAMLQ 151 69**************************************************************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MDWTGSLRPF VPRPEPSLNF LYNYNCDPYQ GMEVKHPGMV DLGHEMLPAM EKNNFGSCQE 60 KKKRLTSDQL DSLERSFQEE IKLDPDRKIK LSKELGLQPR QIAVWFQNRR ARWKNKQLEH 120 LYDVLKQEYD AISREKLKLQ EEVMKLKAML QREQAARKPV STGYTEITGE ETVESTSVAI 180 NGCNNKPQGT GHHQIADYNF LFSVDEYNPV ASSPAYWAGL PSYPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	90	KKKRLTSDQLDSLERSFQEEIKLDPDRKIK
2	109	117	RRARWKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-59	HD-ZIP family protein