PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886298.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 207aa    MW: 22475.7 Da    PI: 7.9768
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.61.9e-282103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+ ++     p++q ++  +++k+FG+s ++ +++a+pe +r+++++sl++eA+ r+ +Pv G+vg++ +++++++q+
  XP_023886298.1   2 SCNGCRVLRKGCSDTCVLRSCLqwiesPKAQGNAVLFLAKFFGRSDIIAFVSAVPEIQRPALFQSLLFEACGRTVNPVDGSVGLLARGKWHVCQT 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l+
  XP_023886298.1  97 AVDTVLA 103
                     9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSCNGCRVLR KGCSDTCVLR SCLQWIESPK AQGNAVLFLA KFFGRSDIIA FVSAVPEIQR  60
PALFQSLLFE ACGRTVNPVD GSVGLLARGK WHVCQTAVDT VLAGGTVTPL TEFETLTNGI  120
FHDTTCNPYL PFTAFMQDAQ PSDPALTLSL GPKKNNTNPW NGYPRALKQR MMAAADTMSS  180
SFSSEVSEMT SFGSSGNDQK KVLNLFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.17e-59LBD family protein