PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886357.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 620aa    MW: 68148.9 Da    PI: 4.8651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.12.6e-1402486071374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+ a+al++++  la +++ +m+++a+yf+eALa+r+++    ly   pp++ + ++  ++l++   f+e++P+lkf+h
  XP_023886357.1 248 LVHALMACAEAVQQSNLTVAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYG----LY---PPNPLN-QSLFDVLQM--HFYETCPYLKFAH 332
                     689****************************************************....55...555554.223444333..4************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+g+p +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+
  XP_023886357.1 333 FTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGAPAFRLTGIGPPAPDDSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLD 427
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   Ea+aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys++fdsle ++   ++e++
  XP_023886357.1 428 ASMLELRPseVEAVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSV---NSEDK 515
                     *******98889**********************....************************************************7...99999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvaceg +r+erhe+l +Wr r+++aGF pv+l+++a kqa++ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  XP_023886357.1 516 VMSEVYLGKQICNVVACEGVDRVERHESLTQWRTRMGSAGFAPVHLGSNAFKQASMLLALFAgGEGYRVEENNGSLMLGWHTRPLIATSAWQ 607
                     *******************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MKRELDPHQS HNLQPLPDSS VTGSSSTGKA KMCWEEEVVQ QDGGMDELLA VLGYQVRASD  60
MAEVAQKLEL LEDLMGNAQG DGLSHLATET VHYNPSDLST WLQSMLTELN PLDPLVPPHH  120
QTPPTTLDDS FLGESSNITS IDFTTSTSNN NNSQSQNTPT QVFDESSSSD YDLKAIPGKA  180
LYSQPQKIQT QTQIESPSSR EHKRLKPSIE PNSEIVPGSS IFSALNLPTT ESTRPVVLID  240
SQENGIRLVH ALMACAEAVQ QSNLTVAEAL VKQIGFLAVS QAGAMRKVAT YFAEALARRI  300
YGLYPPNPLN QSLFDVLQMH FYETCPYLKF AHFTANQAIL EAFEGKKRVH VIDFSMNQGM  360
QWPALMQALA LRPGGAPAFR LTGIGPPAPD DSDHLQEVGW KLAQLAETIH VEFEYRGFVA  420
NSLADLDASM LELRPSEVEA VAVNSVFELH KLLARPGAIE KVLSVVKQMK PEIVTVVEQE  480
ANHNGPVFLD RFTESLHYYS TMFDSLEGSV NSEDKVMSEV YLGKQICNVV ACEGVDRVER  540
HESLTQWRTR MGSAGFAPVH LGSNAFKQAS MLLALFAGGE GYRVEENNGS LMLGWHTRPL  600
IATSAWQLVL NNRAGSVVTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein