PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886753.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 232aa    MW: 25649.5 Da    PI: 6.0652
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-397106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_023886753.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allke 99 
                     a+lke
  XP_023886753.1 102 ASLKE 106
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKELQAA QSFLNGSAST  120
NPNEKYYGKP SHPQDVQSWF QSEISNMMQQ FNPNINNNAS TMPYQENMSM SNSMGNFGNS  180
NIPEEINASY GCSYEEASHS MSSLDMNIYD RQWSLQETDD LQSAAFGYIQ HS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-58LBD family protein