PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886873.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 289aa    MW: 32785.5 Da    PI: 7.9205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
   XP_023886873.1 15 KGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding521.6e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++  +++lG++ W+ Ia++++ gRt++++k++w++yl
   XP_023886873.1  68 RGMFSKQEEETILTFHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      788*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGCKSSDKPK LKHRKGLWSP EEDQRLRNYV LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSKQEEETIL TFHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKLARA  120
EEMEAHTKTQ YTSSSSDTVD SSNSPKNPRT GIPNICNSLE HMEKSTTNAY HSPKEANCSP  180
LPKLLFAEWL SLDHVQGESF ANSAEGLIAR DAFSHNSNFQ YTPMQVFSSN EGTYSGEFHN  240
GLSHDSATTE TFNLQYKFED QISGNGFVDF ISGGDACSDF NMNNGVMYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.17e-67MYB family protein