PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023886903.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 291aa    MW: 32469.6 Da    PI: 7.1662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023886903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+llv++++++G g+W+t +++ g+ R++k+c++rw +yl
   XP_023886903.1 17 RGAWSPEEDQLLVQYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 64
                     89******************************99************97 PP
2Myb_DNA-binding53.36.2e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++  +lG++ W++Ia+ m+ gRt++++k++w+++l
   XP_023886903.1  70 RGPFTAEEEDSIIQLQGMLGNR-WAAIASQMP-GRTDNEIKNYWNTHL 115
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MVKMGRAPCC DKDGVKRGAW SPEEDQLLVQ YINKHGHGSW RTLPKHAGLL RCGKSCRLRW  60
INYLRPDIKR GPFTAEEEDS IIQLQGMLGN RWAAIASQMP GRTDNEIKNY WNTHLKKRSL  120
CSVPSPWVHK PSSKPETSIV KSESSSTRHM VQWESARVEA EARMSMELSL LDSSSMIKTE  180
CDYFLRLWSS EVGESFRKVN GKDGVVCQSH VSPKSSSTKC GSGSDVTIQA INTGTSACTN  240
MKPEQADSYK PKVEDVMATS DSHTSYDLID SSDSALELLL DFPDGEDSFQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.15e-93MYB family protein