PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887002.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 257aa    MW: 29554.4 Da    PI: 7.9182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-19184230148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++vkq+G + W+ Ia++++ gR +kqc++rw+++l
   XP_023887002.1 184 KGQWTVEEDRLLIQLVKQYGVRKWSYIAQMLP-GRIGKQCRERWHNHL 230
                      799*****************************.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MELDTKFREN LASQPILLSD NYLKSYTKDD FSFEAPSSKG FLQDFHHLDQ FQTSGSSSNP  60
IFGVQTQCLN SNFTYGCTST DFDMYECKPF MDNGGHGHVM DNFESGGYLN LPQRNPIDIM  120
GLDRSHMVFT SQDIIKPLNF VVPDEVSCIT AENGYYKKIG MNKNRALPTT KKPQKGRKKS  180
NVVKGQWTVE EDRLLIQLVK QYGVRKWSYI AQMLPGRIGK QCRERWHNHL RPDIKKDTWS  240
EEEDKVLIQA HAEIGNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-61MYB family protein