PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887186.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24506.9 Da    PI: 6.801
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+ nrqvt+skRr gi+KKA+E+ vLCda+v+++if+++gk+++y+s
  XP_023887186.1  9 KRIENTNNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFGTNGKMHDYCS 59
                    79***********************************************96 PP
2K-box77.43.6e-2671169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sgk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL+ keL  Le++Le++l++iR+ ++e+l   ++++ + e+e+++    L+
  XP_023887186.1  71 YHKQSGKKLWDAKHENLSNEIERIKKENDNMQVELRHLKGEDITSLNPKELILLEEALENGLSSIREMQMEYLNIATRNTEMLEEENKHLALVLH 165
                     899*************************************************************************************9999999 PP

           K-box  96 kkle 99 
                     ++ +
  XP_023887186.1 166 QQEM 169
                     8865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENTNNRQVT YSKRRSGIIK KAKEITVLCD AQVSLVIFGT NGKMHDYCSP  60
STTLTDILDK YHKQSGKKLW DAKHENLSNE IERIKKENDN MQVELRHLKG EDITSLNPKE  120
LILLEEALEN GLSSIREMQM EYLNIATRNT EMLEEENKHL ALVLHQQEMA MEANRDMNDE  180
YQQRVREYNS QMPFAFRVQP IQPNLQERM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-91MIKC_MADS family protein