PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887238.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 174aa MW: 19749.8 Da PI: 9.7432

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.4	5.8e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs gkl+ey+s XP_023887238.1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSTLCDAEIGLMVFSAAGKLFEYAS 59 68***********************************************86 PP
2	K-box	46.3	1.8e-16	59	122	34	97
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + R++ Ge+L +++keLq+Le++Le +l+++ +K e +le+i lq+k +l een++L++ XP_023887238.1 59 SSRKIRGEELPGMDIKELQKLEKELEVGLSRVIGTKGERFLEEITALQQKGAQLMEENQRLKQS 122 569**********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MTRRRIQIKK IDNTTARQVT FSKRRRGLFK KAFELSTLCD AEIGLMVFSA AGKLFEYASS 60 RKIRGEELPG MDIKELQKLE KELEVGLSRV IGTKGERFLE EITALQQKGA QLMEENQRLK 120 QSSELITNIC SSSDPQDNYG SDISLKLGSI WAYLVLKDKF VGEINGCNHR LMSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-41	MIKC_MADS family protein