PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887239.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24686.2 Da    PI: 6.9548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.7e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs tgkl+e++s
  XP_023887239.1  9 KKIDNSTARQVTFSKRRRGLFKKAFELSTLCDAEIGLMVFSATGKLFEFAS 59
                    68***********************************************86 PP
2K-box43.91e-15931702097
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +a L keie+  +e+R+  Ge+L  ++++eLq+Le++Le +l+++ ++K e +le+i  lq+k  +l een++L+++
  XP_023887239.1  93 SYAMLSKEIEEKTHELRKTRGEELPGMDIEELQKLEKELEVGLSRVIETKGERFLEEITALQQKGAQLMEENQRLKQM 170
                     6788999****99**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRRKIPIKK IDNSTARQVT FSKRRRGLFK KAFELSTLCD AEIGLMVFSA TGKLFEFASS  60
SMPQVIERHN LHPENLGKMD QLSLKLQLEN GTSYAMLSKE IEEKTHELRK TRGEELPGMD  120
IEELQKLEKE LEVGLSRVIE TKGERFLEEI TALQQKGAQL MEENQRLKQM ENLFSTQTHV  180
LEQGQSSESI TNICSSSNPQ DNDSSNISLK LGLPFPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-70MIKC_MADS family protein