PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887329.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 223aa    MW: 24051.4 Da    PI: 6.7109
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.4e-42701691100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+ql++l+a+la
  XP_023887329.1  70 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKLLQDLPETQRADAVSSMVYEANARIRDPVYGSAGAICHLQKQLSELQAQLA 164
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023887329.1 165 TAQAE 169
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEYKGQTAIA SPPANTVPTA YTYSPSKASS LSPHAAQCSP SFPSPPSKSS SPPSLPPSPP  60
TPPPQVVLSP CAACKILRRR CVEKCVLAPY FPPTDPLKFT IAHRVFGASN IIKLLQDLPE  120
TQRADAVSSM VYEANARIRD PVYGSAGAIC HLQKQLSELQ AQLATAQAEL VNMQCQQANL  180
LAVLCMEVSQ TQECSLQQQP SYTDTSCFLD DNSLGSTWEP LWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-64LBD family protein