PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887343.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26242.2 Da    PI: 7.5546
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.1e-272373151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA ELS+LCdae+avi+fs tgkl++y+s
  XP_023887343.1 23 KKIDNTTARQVTFSKRRRGLFKKACELSTLCDAEIAVIVFSATGKLFDYAS 73
                    68***********************************************86 PP
2K-box44.85.1e-161071832096
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +a L keie   +e+R+++GedL+ ++++eLq+Le+ L  +l+++ ++K+  +le+i  lq+k   l een++L++
  XP_023887343.1 107 SYAMLSKEIEDKTHELRKMKGEDLHGMDIEELQKLEKVLVIGLSRVTETKDGRFLEEITALQQKGALLMEENRRLKQ 183
                     5788999****9***************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MYYIAKGLIT YPGKMTRKKI QIKKIDNTTA RQVTFSKRRR GLFKKACELS TLCDAEIAVI  60
VFSATGKLFD YASSSMQQVI ERHNLHPDNL GKMDQLSLEL QLENGASYAM LSKEIEDKTH  120
ELRKMKGEDL HGMDIEELQK LEKVLVIGLS RVTETKDGRF LEEITALQQK GALLMEENRR  180
LKQIENLFST QTHVLEQGQS FESIINICSS SDPQDNDSSD ISLKLGLPFP K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.19e-79MIKC_MADS family protein