PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887353.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 24778.3 Da PI: 5.9375

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs tgkl+ey+s XP_023887353.1 9 KKIDSTTARQVTFSKRRRGLFKKAYELSTLCDAEIGLMVFSATGKLFEYAS 59 68***********************************************86 PP
2	K-box	44.9	5.1e-16	94	170	21	97
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +a L keie+ + +R++ Ge+L ++++eLq+Le++Le +l+++ ++K e +le+i lq+k +l een++L+++ XP_023887353.1 94 YAMLSKEIEEKTHALRKIRGEELPGMDIEELQRLEKELEVGLSRVLETKGERFLEEITALQQKGAQLMEENQRLKQM 170 7889999999999*************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MTRRKIQIKK IDSTTARQVT FSKRRRGLFK KAYELSTLCD AEIGLMVFSA TGKLFEYASS 60 SMQQVIERRN LCPENLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHALRK IRGEELPGMD 120 IEELQRLEKE LEVGLSRVLE TKGERFLEEI TALQQKGAQL MEENQRLKQM ENLFSTQTHV 180 LEQVQSSESI TNICSSSDPQ DNDSSNISLK LGLPFPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-76	MIKC_MADS family protein