PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887393.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21050.2 Da    PI: 8.2151
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.71.9e-20946138
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ ++
  XP_023887393.1  9 KKIDNSTARQVTFSKRRRGLFKKAFELSTLCDAEIGLM 46
                    68********************************9875 PP
2K-box46.61.5e-16521292097
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +a L keie+  +e+R++ Ge+L  ++++eLq+Le++Le +l+++  +K e +le+i  lq+k  ++ e+n++L++ 
  XP_023887393.1  52 SYAMLSKEIEEKTHELRKISGEELPGMDIEELQKLEKELEVGLSRVIGTKGERFLEEITALQRKGAQMMEANQRLKQS 129
                     5788999****9***************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MTRRRIQIKK IDNSTARQVT FSKRRRGLFK KAFELSTLCD AEIGLMLENG TSYAMLSKEI  60
EEKTHELRKI SGEELPGMDI EELQKLEKEL EVGLSRVIGT KGERFLEEIT ALQRKGAQMM  120
EANQRLKQSS ELITNIYSSS DPQDNDSSDI SLKLGSIWAY LVLKDKLVSE INGCNHKLMS  180
LSTHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.23e-39MIKC_MADS family protein