PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887706.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 193aa MW: 22364.2 Da PI: 9.4088

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l ++++ +G ++Wkt+a++ g++R++k+c++rw++yl XP_023887706.1 15 KGAWTSEEDRKLSEYIEIHGAKRWKTVAAKSGLNRCGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.9e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_023887706.1 68 RGNISDDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MAPKNDGAAK KVMNKGAWTS EEDRKLSEYI EIHGAKRWKT VAAKSGLNRC GKSCRLRWLN 60 YLRPNIKRGN ISDDEEDLIL RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKINQK 120 EKTPEPSTTQ KTMHQKTCDF AQVDKEGVRG TGNSEINFDV NEFFDFTTEG SYGLDWVNKF 180 LELDEDSWLT EKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	3e-53	MYB family protein