PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887939.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 328aa MW: 37016.1 Da PI: 5.2453

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.9	1.3e-23	40	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++e+l Li++++ +e+ +r g+ + +p+W +vs+++++rg++r+p+qC+++w nl ++ykkik++e++ ++e++s + + ++++ XP_023887939.1 40 RWTRDETLILIQGKKVIEDGVRGGRrststfgscQVEPKWNSVSSYCKQRGVKRGPVQCRKRWGNLLTDYKKIKRWESQIKEEAESFWMMRNDIR 134 8************9999999553333444444********************************************999999999988875 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MAPESNSLNE NADCPHVGLV KQEALIDSTD DGNKITRHPR WTRDETLILI QGKKVIEDGV 60 RGGRRSTSTF GSCQVEPKWN SVSSYCKQRG VKRGPVQCRK RWGNLLTDYK KIKRWESQIK 120 EEAESFWMMR NDIRREKKLA SFFDKEIYNA LDGMTFSAAA FPLPLVAVRA NENDSDGVKA 180 EVEDEDGDEE ETPVAVFDSH RHATAEDGLF SDFEHSEQEE SGCRPEYETV SGTVKGKQPG 240 SASIWRESIS EEERKRRRLS LDGQEDASSL GNQLVKVLEM NSNKLNAHLE AQNISCQLDR 300 DQRKEHTDSL VAALSKVTDA LVRIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	258	RKRRR
2	255	259	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-79	Trihelix family protein