PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023888021.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 210aa MW: 23406.3 Da PI: 8.3914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023888021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	9.8e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl++eA++r+rdPvyG+vg+i+ lq+ql+ql+ e++ XP_023888021.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHRREDAVNSLAFEADMRLRDPVYGCVGLISVLQHQLRQLQMEIS 102 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_023888021.1 103 CAKSE 107 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHR 60 REDAVNSLAF EADMRLRDPV YGCVGLISVL QHQLRQLQME ISCAKSELSK YQNLGITSHG 120 LIAAAANNYN HQQNLGINLI GGSGGVRDHH HHYHHQFFPR DQQQMIRSFD GGNNYDASLL 180 AMNVSANLQL SQFPQPRAAA GDDRRTIDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	6e-83	LBD family protein