PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023888163.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 175aa    MW: 20484.2 Da    PI: 8.6245
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023888163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-171469156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +r+++++++eq+  Le+ F +n+ +  e++ +LA++lg++ rqV +W+qN+Ra++k
  XP_023888163.1 14 KRNKQRLNQEQVSLLERSFISNNRLEPERKLQLANQLGVPPRQVAIWYQNKRARWK 69
                    78999**************************************************9 PP
2HD-ZIP_I/II1011e-3216107293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqv+lLE+sF ++++LeperK +la++Lg+ prqva+W+qn+RAR+kt++l  dy+ L+ ++++   e++r+ekeve+L+ el++
  XP_023888163.1  16 NKQRLNQEQVSLLERSFISNNRLEPERKLQLANQLGVPPRQVAIWYQNKRARWKTQNLKLDYNELQLKLENALVEKRRVEKEVERLKGELEK 107
                     79*************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MDFFHTQNRK YPTKRNKQRL NQEQVSLLER SFISNNRLEP ERKLQLANQL GVPPRQVAIW  60
YQNKRARWKT QNLKLDYNEL QLKLENALVE KRRVEKEVER LKGELEKAKE MVCTLKQTVD  120
PQVSCNSISF DHEAARSSSL HAADVNCSIE NNGEFLPLNE DFYACFIGVN GSSWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-24HD-ZIP family protein