PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023889531.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 256aa    MW: 29479 Da    PI: 6.2507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023889531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
   XP_023889531.1 14 KGTWTPEEDRKLIAYVTKYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding56.56.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+e ++++++ lG++ W+tIa+ ++ gRt++++k++w++ 
   XP_023889531.1  67 RGNYSKEEEETIIKLHESLGNR-WSTIASQLP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVRTPCCDKS GMKKGTWTPE EDRKLIAYVT KYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY SKEEEETIIK LHESLGNRWS TIASQLPGRT DNEIKNHWHT NLKKRLKQNS  120
IAQEENSSSN NVFPREKSQK RLKGANNSHL HQETVEIIDS SMLSPQQSSS EFSSITTDTA  180
VAMSTNMVVD DNVTSLEAYA ETNDNFWTQP FLADNSYILS DFQAPLLDTE VLSPLFDEFL  240
CPYGLYEEHE GFDLCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-63MYB family protein