PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023889824.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 719aa    MW: 81916.1 Da    PI: 4.7931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023889824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.7e-1163457161374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cAeav+++d++ a + L++++++asp gd mqR+a+yf+++L+ar+a+s++++yk + +++ts    +++l+a++lf+ ++P+lk+  
  XP_023889824.1 345 LRTLLTLCAEAVAADDQRTAIERLKQIRQHASPVGDGMQRMAHYFANGLQARIAGSGTQIYKVIMTRRTS---AADVLKAYHLFYTAFPFLKVFD 436
                     5789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   ++I++ ve+e+r+Hi+Df+i +G+QWp+L+q+L++Rp+gpp+lRiTg++ +e+g   ++++eetg+rLa++A++++vpfefn  +a+++++
  XP_023889824.1 437 FFSSKTIMNLVENETRLHIVDFGILYGFQWPSLIQQLSARPGGPPKLRITGIDFAEPGfrPAQRVEETGHRLANYAKTFNVPFEFNG-IAQKWDT 530
                     ******************************************************999999***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E+l+Vn++++l++llde+v +es+ + vLkl+++++P+v++    +a h+ + F  rf +al ++s+lf++l++ l+ e+ er+
  XP_023889824.1 531 IQIEDLKLDNNEVLVVNSMYSLKYLLDETVVVESPSNVVLKLIRKMNPHVFIQGVVNAAHGVPFFTSRFRQALFHFSTLFEMLDTYLSCENLERM 625
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E e +g++++nv+aceg+er+er et+++W+ r  +aGF+++pl+++++++ak  ++ ++ + + ++e+s++l+lgWk+r+++++S+Wr
  XP_023889824.1 626 LLESESFGPQAMNVIACEGSERVERPETYKQWQLRNVRAGFRQLPLNQEMMNTAKDRVKSCYHKDFVIDEDSQCLLLGWKGRNIFVLSFWR 716
                     **************************************************************889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    
MDHQTLSEFY GSTSVLEFCD EIYTDTESNF VEQNCASFSF WPPDATPSDL TPTLSVKPEV  60
DLHEDYDFSD AVLKYINQML MEEDMEEKDY MLQGSEVLEA AEKSLYELLG EKYPPSPDNV  120
QPYYVDQNHE SSDEYYALNH SDSSCSTSNN NFVIHGWNCD LVQHKSSIIA PQSTSEPSYS  180
LLEGTSNIPE TLYDSEFILQ FKRGFEEASK FLPSGDGLVI DWESNAFLVK EQKEESKNTF  240
CKAKEKDGNL YSLDGLRAKN NLHSEDVNLE EGRSSKQSAT STESTVSPEM FDMVLLHSEE  300
DDSVLCEAVL NEKSKNVQPN DRSKRSINVR ANRRKTGGKK GVVDLRTLLT LCAEAVAADD  360
QRTAIERLKQ IRQHASPVGD GMQRMAHYFA NGLQARIAGS GTQIYKVIMT RRTSAADVLK  420
AYHLFYTAFP FLKVFDFFSS KTIMNLVENE TRLHIVDFGI LYGFQWPSLI QQLSARPGGP  480
PKLRITGIDF AEPGFRPAQR VEETGHRLAN YAKTFNVPFE FNGIAQKWDT IQIEDLKLDN  540
NEVLVVNSMY SLKYLLDETV VVESPSNVVL KLIRKMNPHV FIQGVVNAAH GVPFFTSRFR  600
QALFHFSTLF EMLDTYLSCE NLERMLLESE SFGPQAMNVI ACEGSERVER PETYKQWQLR  660
NVRAGFRQLP LNQEMMNTAK DRVKSCYHKD FVIDEDSQCL LLGWKGRNIF VLSFWRPDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein