PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023889885.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

FAR1

Protein Properties

Length: 745aa MW: 85566.7 Da PI: 6.8671

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023889885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	34	122	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+ + ++++GF+vrk++ +ksk++g+it+r fvC k+g r +ek++ + + r+r +trt+C kl v++ + +gk++v+++ +eHnH+l XP_023889885.1 34 EFWLKCGRQMGFDVRKHYINKSKKDGKITSRGFVCAKQGIRGPEKED-VIRTRNRDHTRTNCPVKLYVSLVReTGKYKVIDFIEEHNHTL 122 5899999************************************99.9999**************999*************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MDVNEDLSPR VMDANEDLTP RVGMEFNTLE DAWEFWLKCG RQMGFDVRKH YINKSKKDGK 60 ITSRGFVCAK QGIRGPEKED VIRTRNRDHT RTNCPVKLYV SLVRETGKYK VIDFIEEHNH 120 TLHLSETVYM MRSQRKISEV HAGLIELASS SGIKPKAALE LMSREAGGKA NIGFTEIDQQ 180 NYLRTRRQKN MIYGQAACLL GYFQKQLTTN PSFQYAVQLD NVEQITNIFW ADARMIIDYA 240 NFGDVMTFDT TYGTNKELRP LGVFTGFNHH RGLTVFGAAL LCDETAESFK WLFETFLVAH 300 AGKRPKTTFT DQDPAMAKAL SEVMPNTYHG LCTWHIMQNG IKHLGNLMKD GSSFLQVFKT 360 CMFEFNDEIE FEKTWEDMID TYAIHDRSWL DTIYKLKGKW AKCYMKNEFT LGIRSTQLSE 420 SLNGDLKDYL KPDLDVVEFF EHFDRVIEQK RERELQAEFN ARQKFPQLSL KNSPLLKQAV 480 QVYTPVIFRI LQDQYDLASA TRIKNRQEDL LVHTYTIEFM HKPGEFIVSY DTADKTFSCS 540 CRKFEIVGIL CCHVLKVFDF LDIKTIPNMY ILKRWTREAK SGCILDNRRT NVEENVNLSV 600 TQRYRKLCPK LVRLASRAAD NEDAFVLIEK MIEEYGKKVE DIVAKKVAGH QLPHQMPLCS 660 GAENLDPNQH LEDLAPLTPL LSQVSNPADV SQAPLTPSLS QLTPSLSQVS NDAAVCQENE 720 VRFNYEPTPC VENTNACLQT QHSFG

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MDVNEDLSPR VMDANEDLTP RVGMEFNTLE DAWEFWLKCG RQMGFDVRKH YINKSKKDGK  60
ITSRGFVCAK QGIRGPEKED VIRTRNRDHT RTNCPVKLYV SLVRETGKYK VIDFIEEHNH  120
TLHLSETVYM MRSQRKISEV HAGLIELASS SGIKPKAALE LMSREAGGKA NIGFTEIDQQ  180
NYLRTRRQKN MIYGQAACLL GYFQKQLTTN PSFQYAVQLD NVEQITNIFW ADARMIIDYA  240
NFGDVMTFDT TYGTNKELRP LGVFTGFNHH RGLTVFGAAL LCDETAESFK WLFETFLVAH  300
AGKRPKTTFT DQDPAMAKAL SEVMPNTYHG LCTWHIMQNG IKHLGNLMKD GSSFLQVFKT  360
CMFEFNDEIE FEKTWEDMID TYAIHDRSWL DTIYKLKGKW AKCYMKNEFT LGIRSTQLSE  420
SLNGDLKDYL KPDLDVVEFF EHFDRVIEQK RERELQAEFN ARQKFPQLSL KNSPLLKQAV  480
QVYTPVIFRI LQDQYDLASA TRIKNRQEDL LVHTYTIEFM HKPGEFIVSY DTADKTFSCS  540
CRKFEIVGIL CCHVLKVFDF LDIKTIPNMY ILKRWTREAK SGCILDNRRT NVEENVNLSV  600
TQRYRKLCPK LVRLASRAAD NEDAFVLIEK MIEEYGKKVE DIVAKKVAGH QLPHQMPLCS  660
GAENLDPNQH LEDLAPLTPL LSQVSNPADV SQAPLTPSLS QLTPSLSQVS NDAAVCQENE  720
VRFNYEPTPC VENTNACLQT QHSFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1 family protein