PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023889960.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 220aa    MW: 24098.2 Da    PI: 5.2908
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023889960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.11.4e-51682153150
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+vs ++l  a+ lL ++ el+sp+g++ qR+ a+f+ AL+ar+  s+ ++y+ l++++ + +++++ ++al+ ++ +sP++kfsh+t
  XP_023889960.1  68 GLLLQCAECVSMQNLDDATDLLPEIAELSSPYGSSPQRVGAFFAHALQARVITSCLGIYSPLSSKTLTLTQTQKIFSALQSYNSISPLIKFSHFT 162
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgsp 150
                     aNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+R+Tg+gs+
  XP_023889960.1 163 ANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRNKKIRSMRVTGFGSS 215
                     **************************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MLQSLVPQSP ISNMNPKRVD RDDSSGDEAT TATKRRNLSD EASVSGEKAL VEELHRDESE  60
SSGLRLLGLL LQCAECVSMQ NLDDATDLLP EIAELSSPYG SSPQRVGAFF AHALQARVIT  120
SCLGIYSPLS SKTLTLTQTQ KIFSALQSYN SISPLIKFSH FTANQAIFQA LDGEDRVHVI  180
DLDIMQGLQW PGLFHILASR NKKIRSMRVT GFGSSSELLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-69GRAS family protein