PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023890280.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 209aa    MW: 24194.1 Da    PI: 6.639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023890280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.9e-101538326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++C+f+++ G C++GdrC++ H+
  XP_023890280.1 15 KVNCSFYYKIGACRHGDRCSRKHV 38
                    689********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MANYLASIFG TEQDKVNCSF YYKIGACRHG DRCSRKHVKP SYSQTILLPN LYQNPAYDPK  60
ARMNASQLQN HFDAFYEDFW CEMCKYGEIE EVVVCDNNND HLIGNVYARF KYEESASQAC  120
DALNSRWYAA KPVYCELSPV TDFREACCRL NSGEGCVRGG FCNFIHRKEP SAELDRELEL  180
ATKKWLRERG RDERSVERSP TPPPQNPRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.14e-34C3H family protein