PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891126.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 237aa MW: 26565.2 Da PI: 9.0616

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.5e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl XP_023891126.1 13 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLDRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_023891126.1 66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 899*****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MRKPCCDKEG TNKGAWSKQE DQKLIDYIRI HGEGCWRSLP KAAGLDRCGK SCRLRWINYL 60 RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISMGI 120 DPNNHRLNQI PPIPFSQPKC VSPAATSSHE SMNNNESSKP LIKPFANTTT ADRVSDTTSG 180 FEDEISGSLD LNLDLTIAVP SASSLTLVQE KLQINSKSIV TKEVTISEQV PTLALFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	1e-80	MYB family protein