PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891223.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 620aa    MW: 67950.3 Da    PI: 5.0098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.91.5e-1092536192373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + Ll+cA+  ++++  +a ++L  l++ +s++gdp++R+  yf eAL +rl++   +  k+l++ +t+   s++ +  +k++++++P+ kf+hl
  XP_023891223.1 253 LRKLLDCARL-AESEPDRAVKTLIGLRKSVSEHGDPTERVGYYFSEALYSRLSE---QAEKSLTMVQTT---SEDFTLTYKALNDACPYSKFAHL 340
                     5789*****5.55688999999*******************************9...788888888888...899999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ v + ++d
  XP_023891223.1 341 TANQAILEATATATKIHIVDFGIVQGVQWAALLQALATRSTGKPtMIRISGIPAPALGtsPAASLFATGNRLREFANILKLNFEFEP-VLTPIQD 434
                     ****************************************766659*********99999999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+E+laVn++lql++llde+    +   + L+l ksl+Pk+v++ e e+++n+  F++r  +al+yysa+f+sle +l r+s +ri
  XP_023891223.1 435 LNESSFRVEPDEVLAVNFMLQLYNLLDETPVAVE---TALRLAKSLNPKIVTLGEYEVSLNRVGFFNRCKNALRYYSAVFESLEPNLTRDSPDRI 526
                     **************************99888877...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      vEr llgr+i  v+  e+ e +rer+e +e+W+  +e++GF+pv+ls++a++qak ll +++ s  y++ e+   ++ l W+d pL+ vS+W
  XP_023891223.1 527 QVERLLLGRRIAGVIVPEEPEtKRERMEDKEQWKVLMESSGFEPVALSHYAVSQAKILLWNYNySSSYSLIESPPGFLsLAWNDVPLLNVSSW 619
                     ****************9999889****************************************9999*99888766666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQEEQQH HHHHHHQQHQ QQLVGLNPLS LNPWTTSTST  60
THHTLSGSPN LGFGLSGPAF SDPFQVAGGP DTGEPGFPFP NLDQDQTGFR FPDFGGGAGG  120
EFDSDEWMDS LMGGGDSTDS SNLPSGCDAW QNNADFGIYG ADPFTPCPSR LSVRCSPPSD  180
LNRVIFSDSQ KSPSLPQVPS WTPPPPPQPQ PPSPPAVAKD AKPANLAQPS LHKNEVAGVS  240
SSSSEIESAP PLLRKLLDCA RLAESEPDRA VKTLIGLRKS VSEHGDPTER VGYYFSEALY  300
SRLSEQAEKS LTMVQTTSED FTLTYKALND ACPYSKFAHL TANQAILEAT ATATKIHIVD  360
FGIVQGVQWA ALLQALATRS TGKPTMIRIS GIPAPALGTS PAASLFATGN RLREFANILK  420
LNFEFEPVLT PIQDLNESSF RVEPDEVLAV NFMLQLYNLL DETPVAVETA LRLAKSLNPK  480
IVTLGEYEVS LNRVGFFNRC KNALRYYSAV FESLEPNLTR DSPDRIQVER LLLGRRIAGV  540
IVPEEPETKR ERMEDKEQWK VLMESSGFEP VALSHYAVSQ AKILLWNYNY SSSYSLIESP  600
PGFLSLAWND VPLLNVSSWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein