PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891488.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 245aa    MW: 26954 Da    PI: 4.8136
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-397106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v+++++lqqq+ +l+a+l
  XP_023891488.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHVFALQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allke 99 
                     a+lke
  XP_023891488.1 102 ASLKE 106
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RSEAAVTISY EAQARLQDPI YGCVSHVFAL QQQVVNLQAQ LASLKELQAV QSFLNGFASA  120
NPNEKYYGNP SHPQDGQSWF QSEISNMMQQ FNPNINNNAS TMPYQENMSM SNSMGNYGNS  180
NIPEEINASY GCSYEEASHS MSSLDMNIND KQWSLQETDD LQSAAFGYIY SAFMIEDMGL  240
GVTDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-55LBD family protein