PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891575.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 300aa    MW: 34025.2 Da    PI: 6.9779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed++l ++vk++G g W+  +++ g++R++k+c++rw++yl
   XP_023891575.1 14 RGAWTVMEDKILTEYVKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.62.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_023891575.1  67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGRSPCCSKE GLNRGAWTVM EDKILTEYVK LHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKVQDHL  120
SHTSKRSNQV HTQEKQNHSV ERLARGPAEA KIGSSCVVRT KATKCTKAVN IITSEQPIQL  180
DQHNQISETK PEVEVEVQSS MVHHHDPVDF SQFMLGENNP SNFMMDFEME ENFISDLLNL  240
DFSQLPCFED GGDSSSNTCD KGHSSPISDH TQLVSGDTLH GSNFQSVGSL IESELDWLCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-63MYB family protein