PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023892503.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 172aa    MW: 19542.2 Da    PI: 6.6504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023892503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.7e-3761051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk lrr+C+kdCvlapyfp ++p+++a+vhk+FGasn +k+l++lp + r  a++++ +eA  r++dPvyG++g+i++lq+q+ ++++el+
  XP_023892503.1   6 RCAACKSLRRRCPKDCVLAPYFPPTNPQRYACVHKIFGASNATKMLEQLPLHLRAVAADCMSFEASSRVEDPVYGSFGIISQLQKQIIEAQSELV 100
                     6*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     ++k e
  XP_023892503.1 101 KTKGE 105
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MSHSTRCAAC KSLRRRCPKD CVLAPYFPPT NPQRYACVHK IFGASNATKM LEQLPLHLRA  60
VAADCMSFEA SSRVEDPVYG SFGIISQLQK QIIEAQSELV KTKGEIAFHN AQQQQLLQQQ  120
QMQQLQMIHA IAQEVEDQPL WLSSSQQDPF PNVNQQLLED YNYSSTFCGF EF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-45LBD family protein