PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892504.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 173aa MW: 19770.4 Da PI: 6.651

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120	1.3e-37	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+kdC+lapyfp ++p++fa+vhk+FGasn +k+l++lp + r a++++ +eA r+ dPvyG+vg+i++lq+q+ ++++el+ XP_023892504.1 6 RCAACKSLRRRCPKDCALAPYFPPTNPQRFACVHKIFGASNTTKMLEQLPLHLRAVAADCMSFEASSRVVDPVYGSVGIISQLQEQIIEAQSELV 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_023892504.1 101 KTKSE 105 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MSHSTRCAAC KSLRRRCPKD CALAPYFPPT NPQRFACVHK IFGASNTTKM LEQLPLHLRA 60 VAADCMSFEA SSRVVDPVYG SVGIISQLQE QIIEAQSELV KTKSEIAFHK AQQQLQQQQL 120 QQQQMQQLQM IHAIAQEDED WPSWFSSSQQ DSFPNVKLFE DYNYSNTFCG FEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-45	LBD family protein