PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892508.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 167aa MW: 18996.4 Da PI: 6.0909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+kdCvlapyfp ++p++fa+vhk+FGasn +k+l++lp + r a++++ +eA r++dPvyG+v++i++lq+q+ ++++el+ XP_023892508.1 6 RCAACKSLRRRCSKDCVLAPYFPPTNPQRFACVHKIFGASNTTKMLEQLPLHLRAVAVDCMSFEASSRVEDPVYGSVRIISQLQEQIIEAQSELV 100 6*********************************************************************************************9 PP DUF260 96 llkee 100 ++k e XP_023892508.1 101 KTKGE 105 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MSNSTRCAAC KSLRRRCSKD CVLAPYFPPT NPQRFACVHK IFGASNTTKM LEQLPLHLRA 60 VAVDCMSFEA SSRVEDPVYG SVRIISQLQE QIIEAQSELV KTKGEIAFHN AQQQQQMQQL 120 QMIHAIAQEG EDQPSWLSSS QQDLFPNINQ QQLEDYNYSN TFCGFEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-46	LBD family protein