PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023892830.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 108aa    MW: 12878.8 Da    PI: 9.3178
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023892830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.32.8e-311108267374
            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                     +f+s+++  pr++++ri+vE+++++ +ivn++ace+aer+erhe l+kW +rl++aGF+ +pls++++++++ +l++     yr+e ++ +++l 
  XP_023892830.1   1 MFESIDVARPRNDKQRISVEQHCIACDIVNMIACENAERVERHELLGKWIRRLSMAGFTLYPLSTFVTNTVNDILKQQFHVNYRLERRDRAFYLS 95 
                     7**********************************************************************99998776455************* PP

            GRAS 362 WkdrpLvsvSaWr 374
                     W dr++ + SaWr
  XP_023892830.1  96 WLDRKMATSSAWR 108
                     ************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MFESIDVARP RNDKQRISVE QHCIACDIVN MIACENAERV ERHELLGKWI RRLSMAGFTL  60
YPLSTFVTNT VNDILKQQFH VNYRLERRDR AFYLSWLDRK MATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-42GRAS family protein