PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892853.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 228aa MW: 25918.4 Da PI: 8.8539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.4e-08	20	63	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++eE +++ +++k+ + + +++Iar+++ ++ ++k+++ XP_023892853.1 20 VWSPEENKKFEELIKEIPLDcphIFEKIARELP-SKSILDIKEHY 63 7******************************.********9 PP
2	Myb_DNA-binding	49.6	9e-16	123	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+el+ ++ +G+g+Wk+Iar++ ++ q+ s+ qky XP_023892853.1 123 QWTKEEHELFEEGLMIYGKGDWKSIARHVS-TKNNTQIASHAQKY 166 7***************************.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MNLLLSSDLR YNLQSPPRAV WSPEENKKFE ELIKEIPLDC PHIFEKIARE LPSKSILDIK 60 EHYGSLIEGV FIRHRPSFIE VPNYGNSEIG EIVEEIPNKK KKGKEVAPAV EEKPKKKRGM 120 GDQWTKEEHE LFEEGLMIYG KGDWKSIARH VSTKNNTQIA SHAQKYFLRL EKTRAQQNAT 180 YSSGSSKAST SKDAPMSPIA SATDLPVQSD AFFIHPSSST YPSNKFHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	118	KKKKGKEVAPAVEEKPKKKR
2	100	119	KKKKGKEVAPAVEEKPKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	9e-29	MYB family protein