PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023892886.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25502.2 Da    PI: 6.2857
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023892886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.6e-181861245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     i ++  r+vtfskR+ g++K A+EL++LC+a++ v++fs  gk
  XP_023892886.1 18 LITDYCCREVTFSKRKSGLFKSASELCILCGAKIGVVVFSLAGK 61
                    5889999*********************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MSMNKAKSKG RQKIENKLIT DYCCREVTFS KRKSGLFKSA SELCILCGAK IGVVVFSLAG  60
KPFCFGNPDI NTIIDQYVSG NPQTNVGTGD IVESLQRATI LELSKELDMK LKELEIEKER  120
GEAIEKLRKE IQQKLIWEAP IEELGLRDLQ QLSLSLENLK KKIHARVHEL CNGASSSSSS  180
TWSLPSADAT HLVGAFITET SNRDMEWQAQ RQNEELNSSL DCLTFDAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-40M-type_MADS family protein