PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023893231.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LSD
Protein Properties Length: 137aa    MW: 14810.8 Da    PI: 6.1258
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023893231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.58e-124871124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    Cg C++lL YPrGA+ V+C++C+t
  XP_023893231.1 48 CGTCHNLLKYPRGARQVHCSCCHT 71
                    ***********************8 PP
2zf-LSD134.63.1e-1186110125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+Y  GA+sV+C++C +V
  XP_023893231.1  86 CGSCEVLLMYQHGASSVKCSSCYFV 110
                     **********************887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MGSKEMEEEE DEGPPPGWQS IPLPSSQPPA PAPAPAPPSP SEMAQMVCGT CHNLLKYPRG  60
ARQVHCSCCH TGNFVLEAHE VGLVKCGSCE VLLMYQHGAS SVKCSSCYFV TEIGEHNRRP  120
PWSVQQGQPP QPPNPVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-31LSD family protein