PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023893593.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family YABBY
Protein Properties Length: 188aa    MW: 21084 Da    PI: 8.5912
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023893593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.39.8e-6761614170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                     + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q l+ ++    +  ++++ +++++ ++ +s + +++ a+     
  XP_023893593.1   6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSLSWQDA---QAPHHIKPDHRNDYSSSSSSKCNSKIAM----R 93 
                     5689**********************************************999999986...5555565555555444444443333333....3 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +++n +ee      v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_023893593.1  94 APITNNATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161
                     344455555544....89****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDAQAPHHI KPDHRNDYSS SSSSKCNSKI AMRAPITNNA TEERVVNRPP EKRQRVPSAY  120
NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQAK LDKASEKHLT  180
SRAALLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.15e-86YABBY family protein