PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023893879.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23833.5 Da    PI: 5.3165
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023893879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.1e-2661111151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     k+i++ks+r++tfskR++gi+KKA+ELSvL++++v+++++s+tg +y++ +
  XP_023893879.1  61 KFIQDKSRRHITFSKRKAGIMKKAYELSVLTGTQVLLLVVSETGLVYTFTT 111
                     79***********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSAEILNQDP SHHDDHDDLD NPNGGPAETR GVKRPRASAA ADDDDDDDDK PGRERRKIEI  60
KFIQDKSRRH ITFSKRKAGI MKKAYELSVL TGTQVLLLVV SETGLVYTFT TPKLQPLVTK  120
PEGKNLIQAC LNAQEPADSN GVDGESAVES PEEQHAPAPP MPQAMPAQNI PRNQAPQSYM  180
TADQQQALQY QAYLQQQQTQ GAYPMPPQGN MHQQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.22e-08MIKC_MADS family protein