PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894132.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 544aa    MW: 60601.8 Da    PI: 5.3456
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4432.1e-1351745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e+L +cA+a++++d   +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf++
  XP_023894132.1 174 LKEVLCACAKAIEENDRFTTEWLMSHLQQMVSVNGEPIQRLGAYMLEGLVARLASSGSSIYKALKCKEPA---SAELLSYMHILYEVCPYFKFGY 265
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ +++vHiiDf i qG QW++L+q La+Rp+gpp++RiTg+++++s   +   l  +g+rL+k+Ae+++vpfefn+ +    ++
  XP_023894132.1 266 MSANGAIAEAMKDANEVHIIDFMIAQGSQWITLIQGLAARPGGPPKIRITGIDDSTSAyaRGGGLDIVGNRLSKLAESCKVPFEFNA-ARIPAAE 359
                     ******************************************************998899999************************.7889*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L v+pgEa+aVn++l+lh+++desv  +++rd++L+lvkslsPk+v++veqe+++n+++F++rfle+l+yy+a+f+s++++lpr+++eri
  XP_023894132.1 360 VQLEDLGVRPGEAIAVNFALMLHHMPDESVGGQNHRDRLLRLVKSLSPKLVTLVEQESNTNTAPFFHRFLETLKYYTAIFESIDVTLPRDHKERI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++acegaer+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+ ++++ y++ee++g+++lgW dr Lv+ +aW+
  XP_023894132.1 455 NVEQFCLARDIVNIIACEGAERVERHELLGKWRSRFMMAGFTPYPLSSLVNATIKTLLKSYSEK-YTLEERDGAFFLGWLDRVLVTSCAWQ 544
                     **************************************************************65.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MHPSQKQKFS NGLQRFSDEP VQEVVSYCMP TIQSLEPHSC SDDSSQGTHP SVPIFEQYCT  60
LESHSGTSGY AIHNSPSTVS FSPNGSPEQD TESFPVHSHQ SSDNTCGSPV NESCLTDDVD  120
DLRHKIRELE TAMLGPHSDN PDICSITNPV GIVQIPYDAD KCKQMMEMIS RWDLKEVLCA  180
CAKAIEENDR FTTEWLMSHL QQMVSVNGEP IQRLGAYMLE GLVARLASSG SSIYKALKCK  240
EPASAELLSY MHILYEVCPY FKFGYMSANG AIAEAMKDAN EVHIIDFMIA QGSQWITLIQ  300
GLAARPGGPP KIRITGIDDS TSAYARGGGL DIVGNRLSKL AESCKVPFEF NAARIPAAEV  360
QLEDLGVRPG EAIAVNFALM LHHMPDESVG GQNHRDRLLR LVKSLSPKLV TLVEQESNTN  420
TAPFFHRFLE TLKYYTAIFE SIDVTLPRDH KERINVEQFC LARDIVNIIA CEGAERVERH  480
ELLGKWRSRF MMAGFTPYPL SSLVNATIKT LLKSYSEKYT LEERDGAFFL GWLDRVLVTS  540
CAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein